Installation

You can download the lastest version of the software here: https://github.com/carlosp420/bold_retriever/releases

Or, at the command line:

$ # Clone repository
$ git clone https://github.com/carlosp420/bold_retriever.git
$ cd bold_retriever
$ # install dependencies
$ pip install -r requirements.txt

Run the software by specifying a FASTA file as input and a BOLD database for queries:

$ python bold_retriever.py -f ZA2013-0565.fasta -db COX1_SPECIES

As an alternative, if you have virtualenvwrapper installed:

$ # install software
$ mkvirtualenv bold_retriever
$ pip install bold_retriever
$ # install dependencies
$ pip install -r requirements.txt